Update bibliography entry and add .gitignore for manuscript and output files

.gitignore

+# Manuscript auxiliary and pdf files
+Manuscript/*.aux
+Manuscript/*.bbl
+Manuscript/*.blg
+Manuscript/*.log
+Manuscript/*.out
+Manuscript/*.pdf
+Manuscript/*.synctex.gz
+Manuscript/*.kate-swp
+
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# Plots
+Code/**/*.pdf
+Code/**/*.png
+Code/**/*.html
+Code/**/*.svg
+
+# GiD results
+*.post.lst
+*.post.bin

Manuscript/Manuscript.bbl

-\begin{thebibliography}{10}
-\providecommand \doibase [0]{http://dx.doi.org/}%
-
-\bibitem{Deng2014a}
-Deng K, Pan P, Su Y, Ran T, Xue Y. Development of an energy dissipation restrainer for bridges using a steel shear panel. {\it Journal of Constructional Steel Research.} 2014\string;101\string:83--95.
-\newblock \href {\doibase 10.1016/j.jcsr.2014.03.009} {doi: 10.1016/j.jcsr.2014.03.009}
-
-\bibitem{Deng2015}
-Deng K, Pan P, Li W, Xue Y. Development of a buckling restrained shear panel damper. {\it Journal of Constructional Steel Research.} 2015\string;106\string:311--321.
-\newblock \href {\doibase 10.1016/j.jcsr.2015.01.004} {doi: 10.1016/j.jcsr.2015.01.004}
-
-\bibitem{Deng2014}
-Deng K, Pan P, Sun J, Liu J, Xue Y. Shape optimization design of steel shear panel dampers. {\it Journal of Constructional Steel Research.} 2014\string;99\string:187--193.
-\newblock \href {\doibase 10.1016/j.jcsr.2014.03.001} {doi: 10.1016/j.jcsr.2014.03.001}
-
-\bibitem{Deng2015a}
-Deng K, Pan P, Su Y, Xue Y. Shape optimization of {U}-shaped damper for improving its bi-directional performance under cyclic loading. {\it Engineering Structures.} 2015\string;93\string:27--35.
-\newblock \href {\doibase 10.1016/j.engstruct.2015.03.006} {doi: 10.1016/j.engstruct.2015.03.006}
-
-\bibitem{Deng2014b}
-Deng K, Pan P, Lam A, Xue Y. A simplified model for analysis of high-rise buildings equipped with hysteresis damped outriggers. {\it The Structural Design of Tall and Special Buildings.} 2014\string;23(15)\string:1158--1170.
-\newblock \_eprint: https://onlinelibrary.wiley.com/doi/pdf/10.1002/tal.1113\href {\doibase 10.1002/tal.1113} {doi: 10.1002/tal.1113}
-
-\bibitem{Kim2022}
-Kim YC, Mortazavi SJ, Farzampour A, Hu JW, Mansouri I, Awoyera PO. Optimization of the {Curved} {Metal} {Damper} to {Improve} {Structural} {Energy} {Dissipation} {Capacity}. {\it Buildings.} 2022\string;12(1)\string:67.
-\newblock \href {\doibase 10.3390/buildings12010067} {doi: 10.3390/buildings12010067}
-
-\bibitem{Motamedi2018}
-Motamedi M, Nateghi-A. F. Study on mechanical characteristics of accordion metallic damper. {\it Journal of Constructional Steel Research.} 2018\string;142\string:68--77.
-\newblock \href {\doibase 10.1016/j.jcsr.2017.12.010} {doi: 10.1016/j.jcsr.2017.12.010}
-
-\bibitem{Ghamari2021}
-Ghamari A, Kim YJ, Bae J. Utilizing an {I}-shaped shear link as a damper to improve the behaviour of a concentrically braced frame. {\it Journal of Constructional Steel Research.} 2021\string;186\string:106915.
-\newblock \href {\doibase 10.1016/j.jcsr.2021.106915} {doi: 10.1016/j.jcsr.2021.106915}
-
-\bibitem{Xiong2024}
-Xiong L, Guo Z, Cai J, Jiang K, Li L. Seismic performance of the replaceable steel links with different short length ratios. {\it Sci Rep.} 2024\string;14(1)\string:29976.
-\newblock \href {\doibase 10.1038/s41598-024-81336-8} {doi: 10.1038/s41598-024-81336-8}
-
-\bibitem{Zhang2017}
-Zhang Z, Ou J, Li D, Zhang S. Optimization {Design} of {Coupling} {Beam} {Metal} {Damper} in {Shear} {Wall} {Structures}. {\it Applied Sciences.} 2017\string;7(2)\string:137.
-\newblock \href {\doibase 10.3390/app7020137} {doi: 10.3390/app7020137}
-
-\bibitem{Farzampour2019}
-Farzampour A, Khatibinia M, Mansouri I. Shape optimization of butterfly-shaped shear links using {Grey} {Wolf} algorithm. {\it Ingegneria Sismica.} 2019\string;36\string:27--41.
-\newblock \href {\doibase 10.1016/j.jobe.2020.101214} {doi: 10.1016/j.jobe.2020.101214}
-
-\bibitem{Khatibinia2019}
-Khatibinia M, Jalaipour M, Gharehbaghi S. Shape optimization of {U}-shaped steel dampers subjected to cyclic loading using an efficient hybrid approach. {\it Engineering Structures.} 2019\string;197\string:108874.
-\newblock \href {\doibase 10.1016/j.engstruct.2019.02.005} {doi: 10.1016/j.engstruct.2019.02.005}
-
-\bibitem{Khatibinia2021}
-Khatibinia M, Ahrari A, Gharehbaghi S, et al. An efficient approach for optimum shape design of steel shear panel dampers under cyclic loading. {\it Smart Structures and Systems.} 2021\string;27(3)\string:547--557.
-\newblock \href {\doibase 10.12989/sss.2021.27.3.547} {doi: 10.12989/sss.2021.27.3.547}
-
-\bibitem{Shi2019}
-Shi JX, Kozono S, Shimoda M, Takino M, Wada D, Liu Y. Non-parametric shape design optimization of elastic-plastic shear panel dampers under cyclic loading. {\it Engineering Structures.} 2019\string;189\string:48--61.
-\newblock \href {\doibase 10.1016/j.engstruct.2019.03.049} {doi: 10.1016/j.engstruct.2019.03.049}
-
-\bibitem{Saleh2024}
-Saleh YN, Mourad SA, Ibrahim AM. Topology optimization of vertical shear links in eccentrically braced frames. {\it Structures.} 2024\string;66\string:106821.
-\newblock \href {\doibase 10.1016/j.istruc.2024.106821} {doi: 10.1016/j.istruc.2024.106821}
-
-\bibitem{MendozaCuy2025}
-Mendoza-Cuy A, Begambre-Carrillo O, Villalba-Morales JD. Topology optimization of steel slotted dampers with the hybrid cellular automata technique. {\it Advances in Engineering Software.} 2025\string;206\string:103921.
-\newblock \href {\doibase 10.1016/j.advengsoft.2025.103921} {doi: 10.1016/j.advengsoft.2025.103921}
-
-\bibitem{Rios2025}
-R{\'i}os I, G{\'o}mez {\'A}, Romero F, et al. Computational {Design} of {High}-{Performance} {U}-{Shaped} {Seismic} {Dampers} {Using} {Statistical} {Optimization}. {\it Materials.} 2025\string;18(23)\string:5403.
-\newblock \href {\doibase 10.3390/ma18235403} {doi: 10.3390/ma18235403}
-
-\bibitem{Saleh2026}
-Saleh YN, Mourad SA, Salem HG, Ibrahim AM. Computational study on stiffened topology-optimized shear links for eccentrically braced frames. {\it Bull Earthquake Eng.} 2026.
-\newblock \href {\doibase 10.1007/s10518-026-02417-9} {doi: 10.1007/s10518-026-02417-9}
-
-\bibitem{Chan2015}
-Chan RWK, Yuen JKK, Lee EWM, Arashpour M. Application of {Nonlinear}-{Autoregressive}-{Exogenous} model to predict the hysteretic behaviour of passive control systems. {\it Engineering Structures.} 2015\string;85\string:1--10.
-\newblock \href {\doibase 10.1016/j.engstruct.2014.12.007} {doi: 10.1016/j.engstruct.2014.12.007}
-
-\bibitem{Bae2020}
-Bae J, Lee CH, Park M, Alemayehu RW, Ryu J, Ju YK. Modified {Low}-{Cycle} {Fatigue} {Estimation} {Using} {Machine} {Learning} for {Radius}-{Cut} {Coke}-{Shaped} {Metallic} {Damper} {Subjected} to {Cyclic} {Loading}. {\it Int J Steel Struct.} 2020\string;20(6)\string:1849--1858.
-\newblock \href {\doibase 10.1007/s13296-020-00377-7} {doi: 10.1007/s13296-020-00377-7}
-
-\bibitem{Almasabha2022}
-Almasabha G, Alshboul O, Shehadeh A, Almuflih AS. Machine {Learning} {Algorithm} for {Shear} {Strength} {Prediction} of {Short} {Links} for {Steel} {Buildings}. {\it Buildings.} 2022\string;12(6)\string:775.
-\newblock \href {\doibase 10.3390/buildings12060775} {doi: 10.3390/buildings12060775}
-
-\bibitem{Elgammal2024}
-Elgammal A, Ali Y. A novel hysteretic restoring force model for shear link dampers: {A} machine learning approach. {\it Structures.} 2024\string;70\string:107848.
-\newblock \href {\doibase 10.1016/j.istruc.2024.107848} {doi: 10.1016/j.istruc.2024.107848}
-
-\bibitem{Hu2023}
-Hu S, Wang W, Lu Y. Explainable machine learning models for probabilistic buckling stress prediction of steel shear panel dampers. {\it Engineering Structures.} 2023\string;288\string:116235.
-\newblock \href {\doibase 10.1016/j.engstruct.2023.116235} {doi: 10.1016/j.engstruct.2023.116235}
-
-\bibitem{Hu2022}
-Hu Y, Guo W, Long Y, Li S, Xu Z. Physics-informed deep neural networks for simulating {S}-shaped steel dampers. {\it Computers \& Structures.} 2022\string;267\string:106798.
-\newblock \href {\doibase 10.1016/j.compstruc.2022.106798} {doi: 10.1016/j.compstruc.2022.106798}
-
-\end{thebibliography}

Manuscript/Manuscript.blg

-This is BibTeX, Version 0.99d (TeX Live 2023/Debian)
-Capacity: max_strings=200000, hash_size=200000, hash_prime=170003
-The top-level auxiliary file: Manuscript.aux
-The style file: WileyNJD-AMA.bst
-Database file #1: wileyNJD-AMA.bib
-You've used 24 entries,
-            2086 wiz_defined-function locations,
-            718 strings with 9842 characters,
-and the built_in function-call counts, 4996 in all, are:
-= -- 367
-> -- 260
-< -- 0
-+ -- 118
-- -- 94
-* -- 645
-:= -- 882
-add.period$ -- 24
-call.type$ -- 24
-change.case$ -- 0
-chr.to.int$ -- 0
-cite$ -- 24
-duplicate$ -- 264
-empty$ -- 481
-format.name$ -- 94
-if$ -- 1038
-int.to.chr$ -- 0
-int.to.str$ -- 24
-missing$ -- 24
-newline$ -- 100
-num.names$ -- 24
-pop$ -- 41
-preamble$ -- 1
-purify$ -- 0
-quote$ -- 0
-skip$ -- 23
-stack$ -- 0
-substring$ -- 0
-swap$ -- 96
-text.length$ -- 0
-text.prefix$ -- 0
-top$ -- 0
-type$ -- 0
-warning$ -- 0
-while$ -- 24
-width$ -- 26
-write$ -- 298

Manuscript/Manuscript.pag

-\FirstPg{1}\LastPg{23}

Manuscript/wileyNJD-AMA.bib

@@ -120,7 +120,6 @@
   pages    = {27--41},
   volume   = {36},
   abstract = {The shear loading applied to structures is resisted by implementation of hysteric dampers as structural seismic force resisting system. Recently, steel plates with engineered cut-outs are introduced to have controlled yielding. These structural elements behave as shear links are able to post pone brittle limit states, leading to resistance against early fracture. Among which, a promising type of link is butterfly-shaped link, for which the demand moment diagram aligns with capacity moment diagram to efficiently implement the steel. Previous studies show that these elements are used as appropriate choice for structural seismic fuse system since they are able to experience large drifts with sufficient ductility and full hysteric behavior. Therefore, the appropriate geometrical properties for these links are in need of further investigations. In this study, the finite element methodology is initially validated with experimental test. Then optimization criteria is introduced for set of 300 models to investigate the desired geometrical properties for having most energy dissipation with less fracture potential. This paper represents optimization process with which the geometrical properties of butterfly shaped link is improved to have sufficient energy dissipation performance and less potential for fracture. The pushover curves and equivalent plastic strains are obtained from ABAQUS through an iterative process. The Grey Wolf Optimizer method is adopted for optimization methodology due to having strong capability in non-linear system. It can be found that by implementation of optimization methodology the links are designed to have a mode switch from flexural yielding limit state to shear yielding and are able to dissipate energy over a less equivalent plastic strain value.},
-  doi      = {10.1016/j.jobe.2020.101214},
 }
 
 @Article{Khatibinia2019,